Motif HL_06997.2 Version HL_06997.2 of this group appears in releases 1.8 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 7-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4MGN_005 | 4MGN | 0.1412 | 1 | C | G | 51 | G | 52 | G | 53 | C | 54 | G | 55 | G | 56 | U | 57 | G | 58 | G | 59 | G | 60 | A | 61 | C | 63 | cWW | tWH |
| 2 | HL_4JRC_002 | 4JRC | 0.0000 | 1 | B | G | 51 | G | 52 | G | 53 | C | 54 | G | 55 | G | 56 | U | 57 | G | 58 | G | 59 | G | 60 | A | 61 | C | 63 | cWW | tWH |
| 3 | HL_4LCK_005 | 4LCK | 0.3468 | 1 | C | G | 52 | G | 53 | A | 54 | U | 55 | A | 56 | G | 57 | U | 58 | G | 59 | A | 60 | A | 61 | A | 62 | C | 64 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGCGGUGGGAGC | 2 |
| GGAUAGUGAAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGGUGGGAG | 2 |
| GAUAGUGAAAG | 1 |
Release history
| Release | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_06997.2 | Only in the parent motif |
|---|---|---|---|
| HL_06997.1 Compare | HL_4JRC_002, HL_4LCK_005 | HL_4MGN_005 |
Children motifs
| Child motif | Common motif instances | Only in HL_06997.2 | Only in the child motif |
|---|---|---|---|
| HL_85551.1 Compare | HL_4JRC_002, HL_4MGN_005 | HL_4LCK_005 | HL_4TZZ_005, HL_4TZZ_010 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.19 | Max 0.36
Coloring options: