Motif HL_07145.1 Version HL_07145.1 of this group appears in releases 3.80 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_027 | 5TBW | 0.8957 | 3 | 1 | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | C | 1248 | G | 1249 | cWW | ||
| 2 | HL_8C3A_027 | 8C3A | 0.4335 | 3 | 1 | LSU rRNA | C | 1235 | A | 1236 | U | 1237 | G | 1238 | G | 1239 | A | 1240 | C | 1244 | G | 1245 | cWW | cWWa | |
| 3 | HL_5J7L_161 | 5J7L | 0.4119 | 3 | DA | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 4 | HL_5D8H_001 | 5D8H | 0.3600 | 3 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | A | 1183 | G | 1184 | cWW | ||
| 5 | HL_1MMS_001 | 1MMS | 0.3756 | 3 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 6 | HL_6PRV_001 | 6PRV | 0.3852 | 3 | A | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 7 | HL_3CUL_003 | 3CUL | 0.3460 | 1 | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | |
| 8 | HL_1U9S_003 | 1U9S | 0.0000 | 1 | A | RIBONUCLEASE P | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| CAUGGAAGUCG | 2 |
| GUUCGAAUC | 1 |
| GGUAAGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| AUGGAAGUC | 2 |
| UUCGAAU | 1 |
| GUAAGAG | 1 |
- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.34 | Max 0.90
Coloring options: