Motif HL_07278.1 Version HL_07278.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 2-10 | 3-7 | 10-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4W29_038 | 4W29 | 0.8198 | 0 | AX | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | C | 62 | cWW | ncWW | |||
| 2 | HL_1P6V_002 | 1P6V | 0.0000 | 0 | B | tmRNA | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | U | 51 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW | ||
| 3 | HL_3J7R_112 | 3J7R | 0.6044 | 0 | S5 | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | C | 62 | cWW | ncWS | tWH | ncSH | |
| 4 | HL_3J7P_050 | 3J7P | 0.8362 | 0 | 5 | LSU rRNA | A | 3795 | U | 3796 | C | 3797 | U | 3798 | A | 3799 | A | 3800 | U | 3801 | U | 3802 | A | 3803 | G | 3804 | U | 3805 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAUUCC | 2 |
| GGUUCGAUCCC | 1 |
| AUCUAAUUAGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAUUC | 2 |
| GUUCGAUCC | 1 |
| UCUAAUUAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.60 | Avg 0.62 | Max 0.93
Coloring options: