HL_3J7P_050

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUAAUUAGU

Length

11 nucleotides

Bulged bases

3J7P|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07278.1

Basepair signature

cWW-R-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

3J7P|1|5|A|3795
3J7P|1|5|U|3796
3J7P|1|5|C|3797
3J7P|1|5|U|3798
3J7P|1|5|A|3799
3J7P|1|5|A|3800
3J7P|1|5|U|3801
3J7P|1|5|U|3802
3J7P|1|5|A|3803
3J7P|1|5|G|3804
3J7P|1|5|U|3805

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain V

Ribosomal protein uL14