Motif HL_07579.3 Version HL_07579.3 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_210 | 8C3A | 0.8202 | 3 | Pseudoknot geometry (H) | CM | SSU rRNA | U | 813 | A | 814 | U | 815 | U | 816 | U | 817 | U | 821 | G | 822 | G | 823 | U | 824 | U | 825 | U | 826 | C | 827 | U | 828 | A | 829 | cWW | |||
| 2 | HL_4JF2_002 | 4JF2 | 0.7604 | 2 | A | PreQ1-II Riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 34 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW | |||
| 3 | HL_5D5L_002 | 5D5L | 0.6794 | 2 | A | PreQ1-II riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW | |||
| 4 | HL_7JRS_001 | 7JRS | 0.0000 | 1 | A | RNA 3D nanocage | C | 61 | U | 62 | G | 63 | A | 64 | A | 65 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | G | 74 | G | 75 | cWW | ncWWa | ncWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUUAUUUCCUUUGA | 2 |
| UAUUUUGUUGGUUUCUA | 1 |
| CUGAAGCAGGCACGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUUAUUUCCUUUG | 2 |
| AUUUUGUUGGUUUCU | 1 |
| UGAAGCAGGCACG | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.42 | Avg 0.50 | Max 0.82
Coloring options: