Motif HL_08127.1 Version HL_08127.1 of this group appears in releases 3.77 to 3.85
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1WZ2_006 | 1WZ2 | 0.3348 | 7 | Pseudoknot geometry | D | tRNA | A | 934 | U | 942 | cWW |
| 2 | HL_4KR9_003 | 4KR9 | 0.0000 | 4 | X | RNA (39-MER) | G | 10 | C | 15 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCAAGAU | 1 |
| GUGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAAGA | 1 |
| UGUC | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (1)
- (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: