Motif HL_08178.1 Version HL_08178.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKI_001 | 3SKI | 0.8032 | 1 | A | RNA (68-MER) | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS |
| 2 | HL_3SKL_001 | 3SKL | 0.7981 | 1 | A | RNA (66-MER) | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 45 | G | 46 | cWW | ncsS |
| 3 | HL_3RKF_004 | 3RKF | 0.1840 | 1 | B | Guanine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | |
| 4 | HL_1Y27_001 | 1Y27 | 0.0000 | 1 | X | Purine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
| 5 | HL_4FE5_001 | 4FE5 | 0.1385 | 1 | B | xpt-pbuX guanine riboswitch aptamer domain | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUAAUGGG | 2 |
| GGAUAUGGC | 2 |
| GGAUAUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUGG | 2 |
| GAUAUGG | 2 |
| GAUAUAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-R-cSS-R-R
- Heat map statistics
- Min 0.10 | Avg 0.44 | Max 0.84
Coloring options: