HL_8P4V_073
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8P4V|1|4|C|84, 8P4V|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P4V|1|4|U|69
8P4V|1|4|G|70
8P4V|1|4|A|71
8P4V|1|4|A|72
8P4V|1|4|U|73
8P4V|1|4|U|74
8P4V|1|4|G|75
8P4V|1|4|C|76
8P4V|1|4|A|77
8P4V|1|4|G|78
8P4V|1|4|A|79
8P4V|1|4|A|80
8P4V|1|4|U|81
8P4V|1|4|U|82
8P4V|1|4|C|83
8P4V|1|4|C|84
8P4V|1|4|G|85
8P4V|1|4|U|86
8P4V|1|4|G|87
8P4V|1|4|A|88
8P4V|1|4|A|89
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AI
- 60S ribosomal protein L35-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AM
- 60S ribosomal protein L39
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DJ
- 60S ribosomal protein L35-A
Coloring options: