Motif HL_09322.1 Version HL_09322.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZZM_001 | 2ZZM | 0.0000 | 4 | tRNA D-loop | B | C | 12 | A | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | C | 20|||A | A | 21 | A | 22 | G | 23 | cWW | tSH | cWS | tSW | |
| 2 | HL_4V8C_179 | 4V8C | 0.7952 | 2 | CB | G | 12 | G | 13 | A | 14 | A | 15 | U | 16 | U | 17 | G | 18 | A | 21 | G | 22 | A | 23 | C | 24 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGCCUGGCCAAAG | 1 |
| GGAAUUGGUAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCCUGGCCAAA | 1 |
| GAAUUGGUAGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (1)
- (1)
- Basepair signature
- cWW-tSH-cWS-tSW-R-R-R
- Heat map statistics
- Min 0.80 | Avg 0.40 | Max 0.80
Coloring options: