Motif HL_09785.1 Version HL_09785.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_052 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | A | 2441 | G | 2442 | A | 2443 | C | 2444 | A | 2445 | A | 2502 | G | 2503 | U | 2504 | U | 2505 | U | 2506 | cWW | ncWB | |||
| 2 | HL_3EGZ_001 | 3EGZ | 0.9981 | 3 | B | Tetracycline aptamer and artificial riboswitch | G | 12 | A | 13 | A | 14 | G | 15 | A | 16 | U | 18 | G | 21 | A | 22 | C | 23 | C | 24 | cWW | ncWWa | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGACAUAGUUU | 1 |
| GAAGAAUACGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACAUAGUU | 1 |
| AAGAAUACGAC | 1 |
- Annotations
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: