Motif HL_10895.1 Version HL_10895.1 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JRT_001 | 7JRT | 0.5877 | 1 | A | RNA nano bracelet | G | 35 | A | 36 | G | 38 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | cWW | cwW | |
| 2 | HL_7JRT_002 | 7JRT | 0.4879 | 1 | A | RNA nano bracelet | G | 102 | A | 103 | G | 105 | C | 106 | C | 107 | U | 108 | C | 109 | C | 110 | A | 111 | C | 112 | cWW | ncBW | |
| 3 | HL_4PJO_001 | 4PJO | 0.3233 | 1 | 1 | U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. | G | 17 | A | 18 | G | 20 | U | 21 | G | 22 | C | 23 | A | 24 | C | 25 | A | 26 | C | 27 | cWW | ntWW | |
| 4 | HL_5X6B_002 | 5X6B | 0.3825 | 1 | P | tRNA | G | 29 | A | 30 | U | 32 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | C | 39 | cWW | ncWW | |
| 5 | HL_5BTP_004 | 5BTP | 0.2408 | 1 | B | RNA (62-MER) | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | ||
| 6 | HL_4XWF_002 | 4XWF | 0.0000 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | ||
| 7 | HL_4ZNP_002 | 4ZNP | 0.3642 | 1 | A | pfI Riboswitch | C | 58 | G | 59 | A | 60 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCUCGCAC | 1 |
| GAAGCCUCCAC | 1 |
| GAGGUGCACAC | 1 |
| GACUGCAGAUC | 1 |
| CGACCGUCUGG | 1 |
| CGCCCGCCUGG | 1 |
| CGACCGCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCUCGCA | 1 |
| AAGCCUCCA | 1 |
| AGGUGCACA | 1 |
| ACUGCAGAU | 1 |
| GACCGUCUG | 1 |
| GCCCGCCUG | 1 |
| GACCGCCUG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.24 | Avg 0.46 | Max 0.98
Coloring options: