Motif HL_11547.5 Version HL_11547.5 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_055 | 1VWW | 0.4697 | 2 | 5 | C | 4193 | U | 4194 | G | 4196 | G | 4197 | G | 4198 | C | 4199 | G | 4200 | G | 4201 | cWW | |
| 2 | HL_1VX6_054 | 1VX6 | 0.3969 | 1 | A | C | 2955 | U | 2956 | G | 2958 | G | 2959 | G | 2960 | C | 2961 | G | 2962 | G | 2963 | cWW | |
| 3 | HL_4CUV_055 | 4CUV | 0.3932 | 1 | 1 | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |
| 4 | HL_4NVV_051 | 4NVV | 0.1181 | 1 | A | C | 2260 | U | 2261 | G | 2263 | G | 2264 | G | 2265 | C | 2266 | G | 2267 | G | 2268 | cWW | |
| 5 | HL_4IOA_052 | 4IOA | 0.0000 | 1 | X | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |
| 6 | HL_2QBG_055 | 2QBG | 0.1200 | 1 | B | C | 2248 | U | 2249 | G | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 7 | HL_3U5H_055 | 3U5H | 0.1222 | 1 | 5 | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |
| 8 | HL_1S72_055 | 1S72 | 0.1304 | 1 | 0 | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |
| 9 | HL_4A1B_054 | 4A1B | 0.1352 | 1 | 1 | C | 2605 | U | 2606 | G | 2608 | G | 2609 | G | 2610 | C | 2611 | G | 2612 | G | 2613 | cWW | |
| 10 | HL_3R4F_002 | 3R4F | 0.4924 | 0 | A | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW |
| 11 | HL_3RKF_002 | 3RKF | 0.6398 | 0 | A | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 8 |
| CGUGAAAGCG | 1 |
| AUGGUUGU | 1 |
| GUUUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 8 |
| GUGAAAGC | 1 |
| UGGUUG | 1 |
| UUUCUA | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_11547.5 | Only in the parent motif |
|---|---|---|---|
| HL_11547.4 Compare | HL_4IOA_052, HL_3R4F_002, HL_1S72_055, HL_4CUV_055, HL_4A1B_054, HL_4NVV_051, HL_3U5H_055, HL_2QBG_055 | HL_1VWW_055, HL_1VX6_054, HL_3RKF_002 | |
| HL_89482.1 Compare | HL_3RKF_002 | HL_4IOA_052, HL_3R4F_002, HL_1S72_055, HL_4CUV_055, HL_4A1B_054, HL_4NVV_051, HL_3U5H_055, HL_2QBG_055, HL_1VWW_055, HL_1VX6_054 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1FJG_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 |
Children motifs
| Child motif | Common motif instances | Only in HL_11547.5 | Only in the child motif |
|---|---|---|---|
| HL_11547.6 Compare | HL_4IOA_052, HL_3RKF_002, HL_3R4F_002, HL_1S72_055, HL_4CUV_055, HL_4A1B_054, HL_3U5H_055, HL_2QBG_055, HL_1VWW_055, HL_1VX6_054 | HL_4NVV_051 | HL_4QCN_051 |
- Annotations
-
- (11)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.37 | Max 0.77
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