Motif HL_89482.1 Version HL_89482.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | 2-5 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_002 | 1FJG | 0.5726 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ntSH | ||||
| 2 | HL_3LA5_002 | 3LA5 | 0.2006 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ntWH | ||||
| 3 | HL_3FO4_002 | 3FO4 | 0.0976 | 1 | A | Guanine riboswitch C74U mutant | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ncSH | |||
| 4 | HL_1Y26_002 | 1Y26 | 0.0000 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||||
| 5 | HL_3RKF_002 | 3RKF | 0.1297 | 1 | A | Guanine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||||
| 6 | HL_3AL0_002 | 3AL0 | 0.4709 | 2 | E | tRNAGln | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | ncWW | ||||
| 7 | HL_1FJG_014 | 1FJG | 0.6543 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | ||||
| 8 | HL_2AW7_014 | 2AW7 | 0.6835 | 0 | A | 16S ribosomal RNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | ||||
| 9 | HL_2GDI_001 | 2GDI | 0.6578 | 0 | X | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | ||||
| 10 | HL_2GDI_003 | 2GDI | 0.6727 | 0 | Y | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 3 |
| GCUCAAC | 2 |
| CUGCGUG | 2 |
| GUUUUAC | 1 |
| GCUUCCAC | 1 |
| ACUCUGGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 3 |
| CUCAA | 2 |
| UGCGU | 2 |
| UUUUA | 1 |
| CUUCCA | 1 |
| CUCUGGA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_89482.1 | Only in the parent motif |
|---|---|---|---|
| HL_52574.4 Compare | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1FJG_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_3RKF_002 | HL_1VW3_053, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061 |
| HL_11547.3 Compare | HL_3RKF_002 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1FJG_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_4IOA_052, HL_3R4F_002, HL_1S72_055, HL_4A1B_054, HL_4NVV_051, HL_3U5H_055, HL_2QBG_055 |
Children motifs
| Child motif | Common motif instances | Only in HL_89482.1 | Only in the child motif |
|---|---|---|---|
| HL_89482.2 Compare | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_3RKF_002, HL_1FJG_002 | HL_4LX6_002, HL_3QSY_002 |
| HL_37020.1 Compare | HL_1FJG_002 | HL_2GDI_001, HL_2GDI_003, HL_3RKF_002, HL_1FJG_014, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_1VW3_053, HL_1VW3_052, HL_4CUV_064, HL_2QBG_064, HL_2QBG_063, HL_1S72_063, HL_4CUV_063, HL_4A1B_063, HL_4A1B_062, HL_1VX6_063, HL_4NVV_060, HL_1VX2_035, HL_3U5H_064, HL_4NVV_059, HL_4IOA_060, HL_4IOA_061, HL_1VX6_062, HL_3U5H_063 |
| HL_11547.5 Compare | HL_3RKF_002 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1FJG_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_4IOA_052, HL_3R4F_002, HL_1S72_055, HL_4CUV_055, HL_4A1B_054, HL_4NVV_051, HL_3U5H_055, HL_2QBG_055, HL_1VWW_055, HL_1VX6_054 |
- Annotations
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.71
Coloring options: