Motif HL_12767.1 Version HL_12767.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4JF2_002 | 4JF2 | 0.0000 | 1 | A | PreQ1-II Riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | U | 34 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW |
| 2 | HL_5AJ0_020 | 5AJ0 | 0.9761 | 1 | A2 | LSU rRNA | G | 1417 | G | 1418 | C | 1419 | C | 1420 | U | 1421 | U | 1423 | C | 1424 | C | 1425 | A | 1426 | G | 1427 | U | 1428 | C | 1429 | C | 1430 | G | 1431 | C | 1432 | ncWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUUAUUUCCUUUGA | 1 |
| GGCCUCUCCAGUCCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUUAUUUCCUUUG | 1 |
| GCCUCUCCAGUCCG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: