HL_5AJ0_020

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCUCUCCAGUCCGC

Length

16 nucleotides

Bulged bases

5AJ0|1|A2|U|1421, 5AJ0|1|A2|C|1422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12767.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|G|1417
5AJ0|1|A2|G|1418
5AJ0|1|A2|C|1419
5AJ0|1|A2|C|1420
5AJ0|1|A2|U|1421
5AJ0|1|A2|C|1422
5AJ0|1|A2|U|1423
5AJ0|1|A2|C|1424
5AJ0|1|A2|C|1425
5AJ0|1|A2|A|1426
5AJ0|1|A2|G|1427
5AJ0|1|A2|U|1428
5AJ0|1|A2|C|1429
5AJ0|1|A2|C|1430
5AJ0|1|A2|G|1431
5AJ0|1|A2|C|1432

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L18