Motif HL_12908.2 Version HL_12908.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R0D_007 | 4R0D | 0.4546 | 2 | A | Group II catalytic intron | U | 253 | U | 256 | U | 257 | U | 258 | U | 259 | U | 260 | A | 261 | U | 262 | G | 263 | ncWW | |
| 2 | HL_4QLM_002 | 4QLM | 0.0000 | 1 | Pseudoknot geometry | A | cyclic di-AMP riboswitch | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW |
| 3 | HL_4A1B_009 | 4A1B | 0.3580 | 1 | 1 | 26S RRNA | G | 302 | U | 304 | A | 305 | A | 306 | A | 307 | C | 308 | U | 309 | U | 310 | C | 311 | cWW | |
| 4 | HL_4W21_009 | 4W21 | 0.4158 | 1 | 5 | 28S ribosomal RNA | G | 314 | U | 316 | A | 317 | A | 318 | A | 319 | C | 320 | U | 321 | C | 322 | C | 323 | ncWW | |
| 5 | HL_4QCN_002 | 4QCN | 0.4691 | 0 | A | 23S Ribosomal RNA | C | 86 | G | 87 | G | 88 | U | 89 | A | 90 | G | 91 | C | 92 | G | 93 | G | 94 | cWW | |
| 6 | HL_2QBG_004 | 2QBG | 0.6200 | 0 | B | 23S rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUUUUUAUG | 1 |
| UACUCCUUCG | 1 |
| GAUAAACUUC | 1 |
| GGUAAACUCC | 1 |
| CGGUAGCGG | 1 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUUUUAU | 1 |
| ACUCCUUC | 1 |
| AUAAACUU | 1 |
| GUAAACUC | 1 |
| GGUAGCG | 1 |
| GAUAUGA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_12908.2 | Only in the parent motif |
|---|---|---|---|
| HL_12908.1 Compare | HL_4A1B_009, HL_4QCN_002, HL_2QBG_004, HL_4QLM_002 | HL_4R0D_007, HL_4W21_009 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.47 | Max 0.81
Coloring options: