HL_4R0D_007

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UCCUUUUUAUG

Length

11 nucleotides

Bulged bases (A, C, G, U)

254C, 255C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98885.2

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

4R0D|1|A|U|253
4R0D|1|A|C|254
4R0D|1|A|C|255
4R0D|1|A|U|256
4R0D|1|A|U|257
4R0D|1|A|U|258
4R0D|1|A|U|259
4R0D|1|A|U|260
4R0D|1|A|A|261
4R0D|1|A|U|262
4R0D|1|A|G|263

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains

Chain B

LIGATED EXONS