Motif HL_13707.2 Version HL_13707.2 of this group appears in releases 0.3 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1X8W_002 | 1X8W | 0.3158 | 1 | A | Tetrahymena ribozyme RNA | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH | |
| 2 | HL_1GID_005 | 1GID | 0.0000 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH | ncSH |
| 3 | HL_1GID_002 | 1GID | 0.0178 | 1 | A | P4-P6 RNA RIBOZYME DOMAIN | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGCAAAG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCAAA | 3 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_13707.2 | Only in the parent motif |
|---|---|---|---|
| HL_13707.1 Compare | HL_1GID_005, HL_1GID_002 | HL_1X8W_002 | |
| HL_66291.1 Compare | HL_1X8W_002 | HL_1GID_005, HL_1GID_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_13707.2 | Only in the child motif |
|---|---|---|---|
| HL_13707.3 Compare | HL_1GID_005, HL_1GID_002, HL_1X8W_002 | HL_4TZZ_007 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tHH-cSH-R-R
- Heat map statistics
- Min 0.02 | Avg 0.15 | Max 0.32
Coloring options: