Motif HL_13707.3 Version HL_13707.3 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4TZZ_007 | 4TZZ | 0.6807 | 1 | E | C | 30 | U | 31 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | ||
| 2 | HL_1GID_002 | 1GID | 0.0178 | 1 | A | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH | cSH |
| 3 | HL_1GID_005 | 1GID | 0.0000 | 1 | B | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH | ncSH |
| 4 | HL_1X8W_002 | 1X8W | 0.3158 | 1 | A | C | 166 | U | 167 | G | 169 | C | 170 | A | 171 | A | 172 | A | 173 | G | 174 | cWW | ntHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGCAAAG | 3 |
| CUUGCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCAAA | 3 |
| UUGCCAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_13707.3 | Only in the parent motif |
|---|---|---|---|
| HL_13707.2 Compare | HL_1GID_005, HL_1GID_002, HL_1X8W_002 | HL_4TZZ_007 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tHH-cSH-R-R
- Heat map statistics
- Min 0.02 | Avg 0.36 | Max 0.87
Coloring options: