Motif HL_13971.1 Version HL_13971.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-3 | 1-14 | 4-14 | 5-10 | 6-12 | 7-11 | 10-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8OI5_068 | 8OI5 | 0.0000 | 0 | 3 | 5S rRNA | U | 32 | C | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | U | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | ntSH | tSH | ntSW |
| 2 | HL_8P9A_183 | 8P9A | 0.0804 | 0 | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSH | tSH | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCCCGUUCGAUCA | 1 |
| UUCCCGUCCGAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCCGUUCGAUC | 1 |
| UCCCGUCCGAUC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: