Motif HL_14449.1 Version HL_14449.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	1-5
1	HL_5XWP_001	5XWP	0.6730	6	C	RNA (59-MER)	C	9	A	10	A	11	A	17	G	19	cWW
2	HL_2QUX_002	2QUX	0.5769	3	F	RNA (25-MER)	G	10	A	11	A	13	G	15	C	17	cWW
3	HL_5TBW_069	5TBW	0.0000	3	1	LSU rRNA	C	3240	G	3241	G	3242	A	3245	G	3247	cWW
4	HL_5B2P_003	5B2P	0.5566	0	B	Guide RNA	A	64	U	65	U	66	U	67	U	68	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAAAAUGAAG	1
GAUAUGGC	1
CGGAAAGG	1
AUUUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAAAAUGAA	1
AUAUGG	1
GGAAAG	1
UUU	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-F-F-F
Heat map statistics: Min 0.47 | Avg 0.45 | Max 0.70

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