Motif HL_14612.3 Version HL_14612.3 of this group appears in releases 3.12 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R4F_002 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | ||
| 2 | HL_3R4F_004 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51||||15_545 | U | 52||||15_545 | G | 53||||15_545 | G | 54||||15_545 | U | 55||||15_545 | U | 56||||15_545 | G | 57||||15_545 | U | 58||||15_545 | cWW | ncWW | ||
| 3 | HL_4V9F_055 | 4V9F | 0.1206 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |||
| 4 | HL_4IOA_052 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |||
| 5 | HL_4WF9_049 | 4WF9 | 0.1065 | 1 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |||
| 6 | HL_5TBW_054 | 5TBW | 0.4056 | 1 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||
| 7 | HL_4V84_034 | 4V84 | 0.4378 | 0 | AV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW | |||
| 8 | HL_3RKF_008 | 3RKF | 0.6336 | 0 | Purine riboswitch | C | Purine riboswitch | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 4 |
| AUGGUUGU | 2 |
| UUAGGUAG | 1 |
| GUUUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 4 |
| UGGUUG | 2 |
| UAGGUA | 1 |
| UUUCUA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Purine riboswitch (1)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.42 | Max 0.75
Coloring options: