Motif HL_14932.1 Version HL_14932.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AJ3_002 | 5AJ3 | 0.7121 | 1 | A | U | 56 | A | 57 | C | 59 | C | 60 | G | 61 | cWW | ||
| 2 | HL_4V8E_108 | 4V8E | 0.4187 | 0 | BB | C | 48 | A | 49 | U | 50 | C | 51 | G | 52 | |||
| 3 | HL_3OX0_002 | 3OX0 | 0.2513 | 1 | A | G | 49 | G | 50 | A | 52 | A | 53 | C | 54 | cWW | ntSH | |
| 4 | HL_5J7L_179 | 5J7L | 0.0000 | 1 | GNRA related | DA | C | 1806 | G | 1807 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
| 5 | HL_3J9M_054 | 3J9M | 0.5592 | 2 | AA | U | 1281 | G | 1282 | G | 1285 | A | 1286 | A | 1287 | cWW | ||
| 6 | HL_5AJ0_056 | 5AJ0 | 0.8968 | 0 | A2 | C | 4072 | G | 4073 | A | 4074 | G | 4075 | G | 4076 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUCCG | 1 |
| CAUCG | 1 |
| GGAAAC | 1 |
| CGAAAG | 1 |
| UGAUGAA | 1 |
| CGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| AUCC | 1 |
| AUC | 1 |
| GAUGA | 1 |
| GAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- GNRA related (1)
- Basepair signature
- cWW-tSH-R
- Heat map statistics
- Min 0.25 | Avg 0.57 | Max 0.97
Coloring options: