Motif HL_15942.1 Version HL_15942.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_106 | 4V8P | 0.5522 | 2 | Externally structured (H) | D1 | LSU rRNA | U | 983 | U | 985 | C | 986 | G | 988 | cWW |
| 2 | HL_4Y4O_127 | 4Y4O | 0.0880 | 2 | 2A | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 3 | HL_5J7L_157 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 4 | HL_4WF9_025 | 4WF9 | 0.0816 | 2 | X | LSU rRNA | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 5 | HL_4IOA_024 | 4IOA | 0.7514 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 6 | HL_4V9F_026 | 4V9F | 0.7517 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| UCUCAG | 1 |
| UUGAGG | 1 |
| UCGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 3 |
| CUCA | 1 |
| UGAG | 1 |
| CGAA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Externally structured (H) (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.08 | Avg 0.47 | Max 0.81
Coloring options: