3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
UCUCAG
Length
6 nucleotides
Bulged bases
4V8P|1|D1|A|987
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_15942.2
Basepair signature
cWW-R
Number of instances in this motif group
7

Unit IDs

4V8P|1|D1|U|983
4V8P|1|D1|C|984
4V8P|1|D1|U|985
4V8P|1|D1|C|986
4V8P|1|D1|A|987
4V8P|1|D1|G|988

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CK
60S RIBOSOMAL PROTEIN L27A
Chain DC
60S RIBOSOMAL PROTEIN L36A
Chain DT
RPL29

Coloring options:

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