Motif HL_15942.2 Version HL_15942.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	1-4
1	HL_4V9F_026	4V9F	0.7517	2		0	LSU rRNA	U	919	G	921	A	922	G	924	cWW
2	HL_4IOA_024	4IOA	0.7514	2		X	LSU rRNA	U	839	G	841	A	842	G	844	cWW
3	HL_5J7L_157	5J7L	0.0000	2		DA	LSU rRNA	U	826	U	828	A	829	G	831	cWW
4	HL_4WF9_025	4WF9	0.0816	2		X	LSU rRNA	U	871	U	873	A	874	G	876	cWW
5	HL_4Y4O_127	4Y4O	0.0880	2		2A	LSU rRNA	U	826	U	828	A	829	G	831	cWW
6	HL_4V8P_106	4V8P	0.5522	2	Externally structured (H)	D1	LSU rRNA	U	983	U	985	C	986	G	988	cWW
7	HL_5TBW_022	5TBW	0.6185	2	Externally structured	1	LSU rRNA	C	958	U	960	C	961	G	963	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUUAGG	3
UCGAAG	1
UUGAGG	1
UCUCAG	1
CCUCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAG	3
CUCA	2
CGAA	1
UGAG	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Externally structured (H) (1)
Externally structured (1)
Basepair signature: cWW-R
Heat map statistics: Min 0.08 | Avg 0.50 | Max 0.95

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