Motif HL_16173.1 Version HL_16173.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6IV9_001 | 6IV9 | 0.7991 | 3 | B | crRNA (50-MER) | A | -21 | A | -20 | U | -16 | cWW | |
| 2 | HL_2Y9H_003 | 2Y9H | 0.3011 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW | |
| 3 | HL_7A0S_034 | 7A0S | 0.2399 | 3 | GNRA variation | X | LSU rRNA | C | 1376 | G | 1377 | G | 1381 | cWW |
| 4 | HL_6YFT_018 | 6YFT | 0.1349 | 0 | RR | RNA | A | 9 | U | 10 | U | 21 | cWW | |
| 5 | HL_8C3A_227 | 8C3A | 0.0958 | 3 | GNRA variation | CM | SSU rRNA | G | 1765 | U | 1766 | C | 1770 | cWW |
| 6 | HL_4V88_222 | 4V88 | 0.0000 | 3 | GNRA variation | A6 | SSU rRNA | G | 1778 | U | 1779 | C | 1783 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAC | 2 |
| AAAUUU | 1 |
| CGCGUG | 1 |
| CGAACG | 1 |
| AUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAA | 2 |
| AAUU | 1 |
| GCGU | 1 |
| GAAC | 1 |
| U | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- GNRA variation (3)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.80
Coloring options: