Motif HL_17210.1 Version HL_17210.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3HHN_007 | 3HHN | 0.4238 | 0 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 2 | HL_3IVK_002 | 3IVK | 0.3654 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 3 | HL_4WF9_042 | 4WF9 | 0.1300 | 0 | X | LSU rRNA | C | 1779 | G | 1780 | C | 1781 | A | 1782 | G | 1783 | cWW | |
| 4 | HL_5J7L_177 | 5J7L | 0.0941 | 0 | DA | LSU rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW | |
| 5 | HL_4IOA_043 | 4IOA | 0.0000 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW | |
| 6 | HL_4Y4O_146 | 4Y4O | 0.0698 | 0 | 2A | LSU rRNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW | |
| 7 | HL_4V9F_046 | 4V9F | 0.1158 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW | |
| 8 | HL_4ZNP_001 | 4ZNP | 0.6317 | 1 | A | pfI Riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 31 | cWW | |
| 9 | HL_4IOA_039 | 4IOA | 0.7116 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW | |
| 10 | HL_4Y4O_142 | 4Y4O | 0.7145 | 3 | 2A | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW | |
| 11 | HL_4WF9_038 | 4WF9 | 0.7265 | 3 | X | LSU rRNA | C | 1656 | G | 1657 | C | 1659 | C | 1661 | G | 1663 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 4 |
| CGAAG | 3 |
| CGACACAG | 3 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 4 |
| GAA | 3 |
| GACACA | 3 |
| GAAA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: