3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
4IOA|1|X|A|1632, 4IOA|1|X|A|1634
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_66171.1
Basepair signature
cWW-R-R
Number of instances in this motif group
5

Unit IDs

4IOA|1|X|C|1628
4IOA|1|X|G|1629
4IOA|1|X|A|1630
4IOA|1|X|C|1631
4IOA|1|X|A|1632
4IOA|1|X|C|1633
4IOA|1|X|A|1634
4IOA|1|X|G|1635

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain P
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0778 s