Motif HL_17926.1 Version HL_17926.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R0D_007 | 4R0D | 0.4546 | 2 | A | Group II catalytic intron | U | 253 | U | 256 | U | 257 | U | 258 | U | 259 | U | 260 | A | 261 | U | 262 | G | 263 | ncWW | |
| 2 | HL_4V8P_092 | 4V8P | 0.3563 | 1 | D1 | LSU rRNA | G | 302 | U | 304 | A | 305 | A | 306 | A | 307 | C | 308 | U | 309 | U | 310 | C | 311 | cWW | |
| 3 | HL_4QLM_002 | 4QLM | 0.0000 | 1 | A | cyclic di-AMP riboswitch | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW | |
| 4 | HL_4Y4O_104 | 4Y4O | 0.4739 | 0 | 2A | LSU rRNA | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW | |
| 5 | HL_4WF9_002 | 4WF9 | 0.5033 | 0 | X | LSU rRNA | U | 87 | G | 88 | U | 89 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW | |
| 6 | HL_5J7L_135 | 5J7L | 0.6286 | 0 | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUUUUUAUG | 1 |
| GAUAAACUUC | 1 |
| UACUCCUUCG | 1 |
| CGGUAGCGG | 1 |
| UGUAAGUAA | 1 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUUUUAU | 1 |
| AUAAACUU | 1 |
| ACUCCUUC | 1 |
| GGUAGCG | 1 |
| GUAAGUA | 1 |
| GAUAUGA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.36 | Avg 0.49 | Max 0.83
Coloring options: