Motif HL_17926.2 Version HL_17926.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5K7D_002 | 5K7D | 0.8576 | 0 | A | G | 33 | C | 34 | C | 35 | C | 36 | U | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 2 | HL_5KTJ_002 | 5KTJ | 0.8035 | 0 | A | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 3 | HL_5J7L_135 | 5J7L | 0.6286 | 0 | Pseudoknot geometry (H) | DA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW | |
| 4 | HL_4WF9_002 | 4WF9 | 0.5033 | 0 | Pseudoknot geometry | X | U | 87 | G | 88 | U | 89 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW | |
| 5 | HL_4Y4O_104 | 4Y4O | 0.4739 | 0 | 2A | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW | ||
| 6 | HL_4QLM_002 | 4QLM | 0.0000 | 1 | Pseudoknot geometry | A | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW | |
| 7 | HL_4V8P_092 | 4V8P | 0.3563 | 1 | Pseudoknot geometry (H) | D1 | G | 302 | U | 304 | A | 305 | A | 306 | A | 307 | C | 308 | U | 309 | U | 310 | C | 311 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCCUAAGC | 1 |
| GCUCAAAGC | 1 |
| UGAUAUGAA | 1 |
| UGUAAGUAA | 1 |
| CGGUAGCGG | 1 |
| UACUCCUUCG | 1 |
| GAUAAACUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCUAAG | 1 |
| CUCAAAG | 1 |
| GAUAUGA | 1 |
| GUAAGUA | 1 |
| GGUAGCG | 1 |
| ACUCCUUC | 1 |
| AUAAACUU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot geometry (2)
- Pseudoknot geometry (H) (2)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.57 | Max 0.91
Coloring options: