Motif HL_17926.4 Version HL_17926.4 of this group appears in releases 3.27 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QLM_002 | 4QLM | 0.5033 | 1 | Pseudoknot geometry | A | cyclic di-AMP riboswitch | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW | |
| 2 | HL_4Y4O_104 | 4Y4O | 0.4475 | 0 | 2A | LSU rRNA | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW | ||
| 3 | HL_4WF9_002 | 4WF9 | 0.0000 | 0 | Pseudoknot geometry | X | LSU rRNA | U | 87 | G | 88 | U | 89 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW | |
| 4 | HL_5J7L_135 | 5J7L | 0.5650 | 0 | Pseudoknot geometry (H) | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW | |
| 5 | HL_6UFJ_004 | 6UFJ | 0.8008 | 0 | C | Pistol ribozyme | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 6 | HL_5K7D_002 | 5K7D | 0.8256 | 0 | A | RNA 47-MER | G | 33 | C | 34 | C | 35 | C | 36 | U | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUCCUUCG | 1 |
| CGGUAGCGG | 1 |
| UGUAAGUAA | 1 |
| UGAUAUGAA | 1 |
| GCUCAAAGC | 1 |
| GCCCUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCCUUC | 1 |
| GGUAGCG | 1 |
| GUAAGUA | 1 |
| GAUAUGA | 1 |
| CUCAAAG | 1 |
| CCCUAAG | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot geometry (2)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.56 | Max 0.86
Coloring options: