#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-53-4
1 HL_6MJ0_0026MJ00.49163Other HL (H)AtRNA-like 3' UTR elementC32C33G35U36G39cWWncSH
2 HL_3RG5_0053RG50.00001tRNA D-loopBSelenocysteine transfer RNAG15U16G19U20C20|||AcWWcSH
3 HL_3ADD_0013ADD0.33341tRNA D-loopCSelenocysteine transfer RNAG15U16G19U20C20|||AcWWcSH
4 HL_5F9R_0045F9R0.39700Other HLA tracrRNAG105A106G107U108C109cWWncSH
5 HL_2QUW_0062QUW0.80711DHammerhead ribozyme, cleaved fragmentC42G43U44G45G47cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGGUC2
CCAGUUAG1
GAGUC1
CGUGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UGGU2
CAGUUA1
AGU1
GUGA1

Release history

Release4.0
Date2025-08-13
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (2)
  • (1)
  • Other HL (1)
  • Other HL (H) (1)
  • Basepair signature
    cWW-F-cSH
    Heat map statistics
    Min 0.33 | Avg 0.50 | Max 1.00
    Help

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