Motif HL_18177.1 Version HL_18177.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_134 | 5J7L | 0.9879 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | ||
| 2 | HL_5X2G_002 | 5X2G | 0.9482 | 2 | B | sgRNA | G | 54 | U | 55 | U | 56 | G | 58 | C | 59 | G | 60 | G | 61 | G | 62 | C | 64 | cWW | |||
| 3 | HL_7MLX_001 | 7MLX | 0.5768 | 3 | R | RNA (65-MER) | G | 11 | U | 12 | G | 13 | C | 17 | C | 18 | C | 19 | G | 20 | U | 21 | C | 22 | cWW | tHW | ||
| 4 | HL_3IVK_001 | 3IVK | 0.1396 | 3 | M | class I ligase product | G | 1 | G | 2 | A | 3 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH | ||
| 5 | HL_3HHN_006 | 3HHN | 0.0000 | 3 | E | Class I ligase ribozyme, self-ligation product | G | 1 | G | 2 | A | 3 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACACUAUAC | 2 |
| UGCUAAUCUG | 1 |
| GUUUGCGGGAC | 1 |
| GUGCAGCCCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACACUAUA | 2 |
| GCUAAUCU | 1 |
| UUUGCGGGA | 1 |
| UGCAGCCCGU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.58 | Max 0.99
Coloring options: