Motif HL_18368.4 Version HL_18368.4 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_002 | 1H4S | 0.2522 | 3 | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW | |
| 2 | HL_4LFB_004 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 190|||B | C | 190|||C | U | 190|||D | G | 190|||G | cWW | |
| 3 | HL_6CMN_001 | 6CMN | 0.1449 | 1 | D | Trans-Activation Response RNA Element | C | 30 | U | 31 | G | 32 | G | 34 | cWW | |
| 4 | HL_5AMQ_001 | 5AMQ | 0.2428 | 3 | C | RNA | U | 3 | A | 4 | G | 5 | A | 9 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCGGGA | 1 |
| CCUUGG | 1 |
| CUGGG | 1 |
| UAGUGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCGGG | 1 |
| CUUG | 1 |
| UGG | 1 |
| AGUGU | 1 |
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