Motif HL_18368.4 Version HL_18368.4 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	1-4
1	HL_1H4S_002	1H4S	0.2522	3	T	tRNA	U	32	U	33	C	34	A	38	cWW
2	HL_4LFB_004	4LFB	0.0000	2	A	SSU rRNA	C	190\|\|\|B	C	190\|\|\|C	U	190\|\|\|D	G	190\|\|\|G	cWW
3	HL_6CMN_001	6CMN	0.1449	1	D	Trans-Activation Response RNA Element	C	30	U	31	G	32	G	34	cWW
4	HL_5AMQ_001	5AMQ	0.2428	3	C	RNA	U	3	A	4	G	5	A	9	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUCGGGA	1
CCUUGG	1
CUGGG	1
UAGUGUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCGGG	1
CUUG	1
UGG	1
AGUGU	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-R
Heat map statistics: Min 0.14 | Avg 0.19 | Max 0.32

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