Motif HL_18399.1 Version HL_18399.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_049 | 3PYO | 0.2588 | 1 | A | 23S ribosomal RNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | cWB |
| 2 | HL_2ZJR_048 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB |
| 3 | HL_1S72_051 | 1S72 | 0.1388 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 2 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 2 |
| AUCAGUA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_18399.1 | Only in the child motif |
|---|---|---|---|
| HL_01926.1 Compare | HL_1S72_051, HL_2ZJR_048 | HL_3PYO_049 | HL_2QBG_051, HL_1S72_049, HL_4A1B_049, HL_3V2F_047, HL_3U5H_050 |
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