Motif HL_01926.1 Version HL_01926.1 of this group appears in releases 0.3 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_049 | 1S72 | 0.8597 | 0 | GNRA related (H) | 0 | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
| 2 | HL_1S72_051 | 1S72 | 0.2055 | 1 | 0 | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | ||
| 3 | HL_2QBG_051 | 2QBG | 0.0985 | 1 | B | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | |
| 4 | HL_3V2F_047 | 3V2F | 0.0000 | 1 | A | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | |
| 5 | HL_2ZJR_048 | 2ZJR | 0.1122 | 1 | X | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | |
| 6 | HL_4A1B_049 | 4A1B | 0.3841 | 1 | 1 | U | 2287 | C | 2288 | U | 2289 | A | 2290 | A | 2291 | U | 2292 | A | 2294 | G | 2295 | cWW | ncWW | |
| 7 | HL_3U5H_050 | 3U5H | 0.3928 | 1 | 5 | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 3 |
| UCUAAUUAG | 2 |
| CGUACAAG | 1 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 3 |
| CUAAUUA | 2 |
| GUACAA | 1 |
| AUCAGUA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_01926.1 | Only in the parent motif |
|---|---|---|---|
| HL_18399.1 Compare | HL_1S72_051, HL_2ZJR_048 | HL_2QBG_051, HL_1S72_049, HL_4A1B_049, HL_3V2F_047, HL_3U5H_050 | HL_3PYO_049 |
| HL_54834.1 Compare | HL_1S72_049 | HL_2ZJR_048, HL_2QBG_051, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 | HL_1O0C_002, HL_1S72_032 |
| HL_82371.1 Compare | HL_2QBG_051 | HL_2ZJR_048, HL_1S72_049, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 | HL_3O58_070, HL_2QBG_023, HL_3PYO_057, HL_3O58_050 |
Children motifs
| Child motif | Common motif instances | Only in HL_01926.1 | Only in the child motif |
|---|---|---|---|
| HL_01926.2 Compare | HL_2ZJR_048, HL_2QBG_051, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 | HL_1S72_049 | |
| HL_77235.1 Compare | HL_1S72_049 | HL_2ZJR_048, HL_2QBG_051, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 | HL_4A1B_047, HL_1QRS_002, HL_1S72_032 |
- Annotations
-
- (6)
- GNRA related (H) (1)
- Basepair signature
- cWW-R-R-tSH-R
- Heat map statistics
- Min 0.10 | Avg 0.39 | Max 0.91
Coloring options: