Motif HL_18474.1 Version HL_18474.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_047 | 4A1B | 0.7519 | 1 | 1 | LSU rRNA | A | 2214 | C | 2215 | G | 2216 | C | 2217 | A | 2218 | U | 2220 | U | 2221 | cWW | cWW |
| 2 | HL_4CUX_029 | 4CUX | 0.0000 | 1 | 2 | SSU rRNA | G | 1295 | A | 1296 | G | 1297 | U | 1298 | G | 1299 | U | 1301 | U | 1302 | ncWW | |
| 3 | HL_1VWW_047 | 1VWW | 0.7162 | 3 | 5 | LSU rRNA | C | 3667 | C | 3668 | G | 3669 | C | 3670 | G | 3671 | G | 3674 | G | 3675 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGCAAUU | 1 |
| GAGUGAUU | 1 |
| GGGAACGGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGCAAU | 1 |
| AGUGAU | 1 |
| GGAACGGG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_18474.1 | Only in the parent motif |
|---|---|---|---|
| HL_94189.1 Compare | HL_4A1B_047 | HL_1VWW_047, HL_4CUX_029 | HL_4BPP_005 |
| HL_95079.1 Compare | HL_4CUX_029 | HL_4A1B_047, HL_1VWW_047 |
Children motifs
| Child motif | Common motif instances | Only in HL_18474.1 | Only in the child motif |
|---|---|---|---|
| HL_72388.1 Compare | HL_4A1B_047 | HL_1VWW_047, HL_4CUX_029 | HL_4BPP_005 |
| HL_88259.1 Compare | HL_4CUX_029 | HL_4A1B_047, HL_1VWW_047 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.72 | Avg 0.51 | Max 0.82
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