Motif HL_94189.1 Version HL_94189.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_047 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW |
| 2 | HL_4BPP_005 | 4BPP | 0.4455 | 1 | A | 18S RRNA | C | 225 | A | 226 | G | 227 | A | 229 | A | 230 | U | 231 | G | 232 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGCAAUU | 1 |
| CAGCAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGCAAU | 1 |
| AGCAAU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_94189.1 | Only in the parent motif |
|---|---|---|---|
| HL_16643.1 Compare | HL_4A1B_047 | HL_4BPP_005 | HL_4NVV_025, HL_1VW3_012 |
| HL_16728.1 Compare | HL_4BPP_005 | HL_4A1B_047 | HL_4A1B_033 |
Children motifs
| Child motif | Common motif instances | Only in HL_94189.1 | Only in the child motif |
|---|---|---|---|
| HL_18474.1 Compare | HL_4A1B_047 | HL_4BPP_005 | HL_1VWW_047, HL_4CUX_029 |
| HL_84548.1 Compare | HL_4BPP_005 | HL_4A1B_047 | HL_4A1B_033 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.45 | Avg 0.22 | Max 0.45
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