Motif HL_19033.2 Version HL_19033.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4W21_038 | 4W21 | 0.4032 | 1 | 5 | 28S ribosomal RNA | A | 2623 | G | 2624 | U | 2625 | U | 2626 | C | 2627 | U | 2628 | C | 2629 | U | 2630 | U | 2632 | U | 2633 | |||
| 2 | HL_4CUV_037 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | A | 1679 | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | U | 1689 | cWW | ncWW | |
| 3 | HL_4CUX_035 | 4CUX | 0.8727 | 1 | 2 | 18S RRNA | A | 1593 | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | U | 1603 | cWW | ncWW | ntWW |
| 4 | HL_2AW7_030 | 2AW7 | 0.9013 | 1 | A | 16S ribosomal RNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUUCUCUUUU | 1 |
| AGUUAUCUUUU | 1 |
| AGUCAUCAGCU | 1 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCUCUUU | 1 |
| GUUAUCUUU | 1 |
| GUCAUCAGC | 1 |
| AUCAGAAUG | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19033.2 | Only in the parent motif |
|---|---|---|---|
| HL_19033.1 Compare | HL_4CUX_035, HL_2AW7_030, HL_4CUV_037 | HL_4W21_038 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.40 | Avg 0.59 | Max 0.99
Coloring options: