HL_4W21_038

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

4W21|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19033.2

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

4W21|1|5|A|2623
4W21|1|5|G|2624
4W21|1|5|U|2625
4W21|1|5|U|2626
4W21|1|5|C|2627
4W21|1|5|U|2628
4W21|1|5|C|2629
4W21|1|5|U|2630
4W21|1|5|U|2631
4W21|1|5|U|2632
4W21|1|5|U|2633

Current chains

Chain 5

28S ribosomal RNA

Nearby chains