Motif HL_19162.3 Version HL_19162.3 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7MLX_001 | 7MLX | 0.5768 | 1 | R | RNA (65-MER) | G | 11 | U | 12 | G | 13 | A | 15 | G | 16 | C | 17 | C | 18 | C | 19 | G | 20 | U | 21 | C | 22 | cWW | tHW | ||
| 2 | HL_3IVK_001 | 3IVK | 0.1396 | 1 | M | class I ligase product | G | 1 | G | 2 | A | 3 | C | 5||A | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH | ||
| 3 | HL_3HHN_006 | 3HHN | 0.0000 | 1 | E | Class I ligase ribozyme, self-ligation product | G | 1 | G | 2 | A | 3 | C | 5 | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACACUAUAC | 2 |
| GUGCAGCCCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACACUAUA | 2 |
| UGCAGCCCGU | 1 |
- Annotations
- Basepair signature
- cWW-tSH-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.28 | Max 0.58
Coloring options: