Motif HL_19598.1 Version HL_19598.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6AAY_001 | 6AAY | 0.6444 | 3 | B | RNA (52-MER) | C | 37 | A | 38 | U | 39 | U | 41 | G | 44 | cWW | |
| 2 | HL_7A0S_019 | 7A0S | 0.0000 | 1 | X | LSU rRNA | U | 622 | G | 623 | A | 624 | A | 626 | A | 627 | cWW | ntsS |
| 3 | HL_8VTW_018 | 8VTW | 0.2959 | 2 | 1A | LSU rRNA | C | 612 | G | 613 | U | 614 | A | 614|||C | G | 615 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUUUGG | 1 |
| UGAAAA | 1 |
| CGUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUUUG | 1 |
| GAAA | 1 |
| GUUGA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.30 | Avg 0.39 | Max 0.81
Coloring options: