Motif HL_19626.3 Version HL_19626.3 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_002 | 4A1B | 0.6229 | 1 | 1 | 26S RRNA | U | 67 | A | 68 | A | 69 | C | 70 | A | 72 | cWW | ncSH |
| 2 | HL_1VWW_002 | 1VWW | 0.2061 | 1 | 5 | 28S ribosomal RNA | U | 68 | A | 69 | A | 70 | C | 71 | A | 73 | cWW | ncSW |
| 3 | HL_3U5H_002 | 3U5H | 0.1170 | 1 | 5 | 25S rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 4 | HL_4CUV_002 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 5 | HL_1VX6_002 | 1VX6 | 0.1136 | 1 | A | 28S ribosomal RNA | U | 69 | A | 70 | A | 71 | C | 72 | A | 74 | cWW | cSW |
| 6 | HL_4CUX_004 | 4CUX | 0.3823 | 1 | 2 | 18S RRNA | C | 190 | C | 191 | U | 192 | U | 193 | G | 195 | ncWW | |
| 7 | HL_4QCN_008 | 4QCN | 0.5612 | 2 | A | 23S Ribosomal RNA | G | 269 | C | 270 | U | 272 | G | 273 | C | 275 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACUA | 2 |
| CAACCG | 2 |
| UAACCA | 1 |
| CCUUUG | 1 |
| GCUUGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 3 |
| AACU | 2 |
| CUUU | 1 |
| CUUGU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19626.3 | Only in the parent motif |
|---|---|---|---|
| HL_19626.2 Compare | HL_4A1B_002, HL_1VX6_002, HL_1VWW_002, HL_4CUX_004, HL_4CUV_002, HL_3U5H_002 | HL_4QCN_008 | HL_4NVV_008 |
Children motifs
| Child motif | Common motif instances | Only in HL_19626.3 | Only in the child motif |
|---|---|---|---|
| HL_19626.4 Compare | HL_4A1B_002, HL_4QCN_008, HL_1VX6_002, HL_4CUX_004, HL_4CUV_002, HL_3U5H_002 | HL_1VWW_002 | HL_4W21_002 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cSW-R
- Heat map statistics
- Min 0.11 | Avg 0.39 | Max 0.76
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