Motif HL_19626.4 Version HL_19626.4 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_002 | 4A1B | 0.6229 | 1 | 1 | LSU rRNA | U | 67 | A | 68 | A | 69 | C | 70 | A | 72 | cWW | ncSH |
| 2 | HL_4W21_002 | 4W21 | 0.1472 | 1 | 5 | LSU rRNA | U | 68 | A | 69 | A | 70 | C | 71 | A | 73 | cWW | cSW |
| 3 | HL_3U5H_002 | 3U5H | 0.1170 | 1 | 5 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 4 | HL_4CUV_002 | 4CUV | 0.0000 | 1 | 1 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 5 | HL_1VX6_002 | 1VX6 | 0.1136 | 1 | A | LSU rRNA | U | 69 | A | 70 | A | 71 | C | 72 | A | 74 | cWW | cSW |
| 6 | HL_4CUX_004 | 4CUX | 0.3823 | 1 | 2 | SSU rRNA | C | 190 | C | 191 | U | 192 | U | 193 | G | 195 | ncWW | |
| 7 | HL_4QCN_008 | 4QCN | 0.5612 | 2 | A | LSU rRNA | G | 269 | C | 270 | U | 272 | G | 273 | C | 275 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACUA | 2 |
| CAACCG | 2 |
| UAACCA | 1 |
| CCUUUG | 1 |
| GCUUGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 3 |
| AACU | 2 |
| CUUU | 1 |
| CUUGU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19626.4 | Only in the parent motif |
|---|---|---|---|
| HL_19626.3 Compare | HL_4A1B_002, HL_4QCN_008, HL_1VX6_002, HL_4CUX_004, HL_4CUV_002, HL_3U5H_002 | HL_4W21_002 | HL_1VWW_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cSW-R
- Heat map statistics
- Min 0.11 | Avg 0.38 | Max 0.76
Coloring options: