Motif HL_20010.1 Version HL_20010.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MSF_002 | 6MSF | 0.6569 | 1 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | A | 9||||P_1 | C | 10||||P_1 | cWW |
| 2 | HL_1U63_001 | 1U63 | 0.0000 | 2 | B | 49 NT FRAGMENT OF MRNA FOR L1 | G | 20 | A | 22 | C | 23 | C | 25 | cWW | |
| 3 | HL_1U63_002 | 1U63 | 0.6187 | 2 | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 20 | A | 22 | C | 23 | C | 25 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUC | 2 |
| GUCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACU | 2 |
| UCA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_20010.1 | Only in the child motif |
|---|---|---|---|
| HL_42677.1 Compare | HL_6MSF_002 | HL_1U63_002, HL_1U63_001 | HL_1FJG_005, HL_1ZSE_001, HL_2B2D_001, HL_6MSF_001, HL_4A1B_019 |
| HL_35865.1 Compare | HL_1U63_001 | HL_1U63_002, HL_6MSF_002 |
- Annotations
-
- (2)
- Mini UNCG (1)
- Basepair signature
- Heat map statistics
- Min 0.62 | Avg 0.46 | Max 0.80
Coloring options: