Motif HL_20062.1 Version HL_20062.1 of this group appears in releases 3.80 to 3.82

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3	1-3
1	HL_2OZB_001	2OZB	1.9071	4	C	RNA comprising the 5' Stem-Loop RNA of U4snRNA	G	35	A	39	C	41	cWW
2	HL_2Y8Y_001	2Y8Y	0.6003	3	B	RNA (19-mer)	C	11	G	14	G	16	cWW
3	HL_5B2P_004	5B2P	0.8113	2	B	Guide RNA	U	82	G	85	A	86	cWW
4	HL_5TBW_045	5TBW	0.3289	2	1	LSU rRNA	G	2110	A	2113	C	2114	cWW
5	HL_8C3A_045	8C3A	0.2650	2	1	LSU rRNA	G	2088	A	2091	C	2092	cWW
6	HL_6FQL_001	6FQL	0.0000	2	B	RNA (13-mer)	U	5	A	8	A	9	cWW
7	HL_6FQ3_001	6FQ3	0.0533	2	B	RNA (13-mer)	U	5	A	8	A	9	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAC	2
GUUUAUC	1
CGCGUG	1
UUUGA	1
UUUAA	1
UCCAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUA	2
UUUAU	1
GCGU	1
UUG	1
UUA	1
CCA	1

Release history

Release	3.80	3.81	3.82
Date	2024-01-31	2024-02-28	2024-03-27
Status	New id, 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-F
Heat map statistics: Min 0.05 | Avg 0.68 | Max 1.92

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__5146419569898453__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__5146419569898453__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/HL_20062.1","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__5146419569898453__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"5146419569898453","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/HL_20062.1"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__5146419569898453__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started