Motif HL_20062.1 Version HL_20062.1 of this group appears in releases 3.80 to 3.82
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2OZB_001 | 2OZB | 1.9071 | 4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | G | 35 | A | 39 | C | 41 | cWW | |
| 2 | HL_2Y8Y_001 | 2Y8Y | 0.6003 | 3 | B | RNA (19-mer) | C | 11 | G | 14 | G | 16 | cWW | |
| 3 | HL_5B2P_004 | 5B2P | 0.8113 | 2 | B | Guide RNA | U | 82 | G | 85 | A | 86 | cWW | |
| 4 | HL_5TBW_045 | 5TBW | 0.3289 | 2 | 1 | LSU rRNA | G | 2110 | A | 2113 | C | 2114 | cWW | |
| 5 | HL_8C3A_045 | 8C3A | 0.2650 | 2 | 1 | LSU rRNA | G | 2088 | A | 2091 | C | 2092 | cWW | |
| 6 | HL_6FQL_001 | 6FQL | 0.0000 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW | |
| 7 | HL_6FQ3_001 | 6FQ3 | 0.0533 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC | 2 |
| GUUUAUC | 1 |
| CGCGUG | 1 |
| UUUGA | 1 |
| UUUAA | 1 |
| UCCAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA | 2 |
| UUUAU | 1 |
| GCGU | 1 |
| UUG | 1 |
| UUA | 1 |
| CCA | 1 |
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