Motif HL_20535.2 Version HL_20535.2 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6GSK_204 | 6GSK | 0.7010 | 3 | T-loop | 1K | tRNA | G | 53 | 5MU | 54 | PSU | 55 | A | 58 | U | 60 | C | 61 | ncWW | ntWH | |
| 2 | HL_5VOE_001 | 5VOE | 0.0000 | 2 | A | Aptamer 11F7t (36-MER) | G | 15 | A | 16 | UFT | 17 | A | 19 | UFT | 20 | CFL | 22 | cWW | cWH | ||
| 3 | HL_8P9A_235 | 8P9A | 0.6018 | 3 | sR | SSU rRNA | U | 715 | C | 716 | C | 717 | G | 720 | G | 722 | G | 723 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| G(5MU)(PSU)CGACUC | 1 |
| GA(UFT)AA(UFT)A(CFL) | 1 |
| UCCUUGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (5MU)(PSU)CGACU | 1 |
| A(UFT)AA(UFT)A | 1 |
| CCUUGUG | 1 |
- Annotations
-
- (2)
- T-loop (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.60 | Avg 0.45 | Max 0.72
Coloring options: