Motif HL_20554.1 Version HL_20554.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A43_001 | 2A43 | 0.2584 | 2 | A | RNA Pseudoknot | G | 6 | C | 7 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
| 2 | HL_5J7L_014 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 617 | C | 618 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH |
| 3 | HL_4LFB_014 | 4LFB | 0.1304 | 1 | A | SSU rRNA | G | 617 | C | 618 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH |
| 4 | HL_6CZR_085 | 6CZR | 0.2203 | 1 | 1a | SSU rRNA | G | 601 | C | 602 | C | 604 | A | 605 | A | 606 | C | 607 | cWW | ntWH |
| 5 | HL_4W90_004 | 4W90 | 0.4182 | 2 | C | cyclic di-AMP riboswitch | U | 13 | G | 14 | A | 16 | A | 17 | C | 19 | A | 20 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 3 |
| GCACCGUC | 1 |
| UGAAAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 3 |
| CACCGU | 1 |
| GAAAUC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tWH-F-F
- Heat map statistics
- Min 0.13 | Avg 0.26 | Max 0.52
Coloring options: