Motif HL_20743.3 Version HL_20743.3 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3RKF_007 | 3RKF | 0.1923 | 2 | C | Guanine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 37 | G | 38 | C | 39 | cWW | |||
| 2 | HL_1Y27_001 | 1Y27 | 0.1518 | 2 | X | Purine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | G | 37 | G | 38 | C | 39 | cWW | ncSs | ||
| 3 | HL_5KPY_001 | 5KPY | 0.1591 | 2 | A | 5-hydroxytryptophan RNA aptamer | G | 31 | G | 32 | A | 33 | U | 34 | G | 37 | G | 38 | C | 39 | cWW | ncSs | ||
| 4 | HL_6P2H_001 | 6P2H | 0.1404 | 2 | A | RNA (69-MER) | A | 31 | A | 32 | A | 33 | U | 34 | G | 37 | G | 38 | U | 39 | cWW | ncSs | ||
| 5 | HL_4FEN_001 | 4FEN | 0.0000 | 2 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 31 | G | 32 | A | 33 | U | 34 | G | 37 | G | 38 | C | 39 | cWW | ncSs | ||
| 6 | HL_5BTP_003 | 5BTP | 0.3652 | 1 | B | RNA (62-MER) | G | 28 | A | 29 | A | 30 | U | 31 | A | 33 | A | 34 | C | 35 | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAUGGC | 3 |
| GGAUAUAGC | 1 |
| AAAUAUGGU | 1 |
| GAAUUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAUGG | 3 |
| GAUAUAG | 1 |
| AAUAUGG | 1 |
| AAUUAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-F-cSS-F
- Heat map statistics
- Min 0.11 | Avg 0.19 | Max 0.43
Coloring options: